footprint

ipasuite.workflow.scripts.tools.footprint.footprint_ttest(cond1_path, cond1_name, cond2_path, cond2_name, deviation_type='stdev', ttest_pvalue_thres=0.05, diff_thres=0.2, ratio_thres=0.2)

Compares two reactivity profiles (two ‘conditions’)

Parameters:

• cond1_path – aggreact_tsv file of condition 1

• cond1_name – name of condition 1

• cond2_path – aggreact_tsv file of condition 2

• cond1_name – name of condition 2

Returns:

results prepared for plotting by footprint.plot_reactivity() footprint_csv (DataFrame): results in table format (to be written to tsv file)

Return type:

footprint (DataFrame)