IPANEMAP Suite

Getting started

  • Introduction
  • Requirements
  • Installation
  • Run the pipeline
  • Configuration
  • Output and Reports

Go further

  • Data import
  • Data conversion
  • QuShape project generation
  • QuShape treatment of SHAPE-CE data
  • QuShape reactivity extraction
  • Reactivity Normalization
  • Reactivity Aggregation
  • Structure generation - IPANEMAP
  • Footprinting
  • Workflow configuration reference
  • Folder structure
  • Troubleshooting
  • Pipeline scripts references
    • aggregate_reactivity
    • ceq8000_to_tsv
    • normalize_reactivity
    • qushape_extract_reactivity
    • qushape_proj_generator
    • footprint
    • shift_reactivity
    • split_fasta
IPANEMAP Suite
  • Pipeline scripts references
  • View page source

Pipeline scripts references

  • aggregate_reactivity
    • aggregate()
  • ceq8000_to_tsv
    • all_to_tsv()
    • get_start_line()
    • main()
    • to_tsv()
  • normalize_reactivity
    • compute_interquart_norm_term()
    • compute_simple_norm_term()
    • normalize_all()
  • qushape_extract_reactivity
  • qushape_proj_generator
    • createDProject()
    • createQuShapeFile()
    • getProjData()
    • main()
  • footprint
    • footprint_ttest()
  • shift_reactivity
    • check_files()
    • main()
    • shift()
  • split_fasta
    • check_files()
    • main()
    • split_fasta()
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© Copyright 2024, François-Xavier Lyonnet du Moutier, Nan Pan, Sebastian Will.

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